STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tpa04P-type transport ATPase (probable substrate copper/metal cation). (818 aa)    
Predicted Functional Partners:
NP_2970A
Uncharacterized protein.
 
   
 0.833
cbaE
Ba3-type terminal oxidase subunit CbaE.
       0.773
cbaA
Ba3-type terminal oxidase subunit I.
 
  
 0.651
cbaB
Ba3-type terminal oxidase subunit II.
 
  
 0.651
cbaC
CbaC protein.
       0.544
cbaD
Ba3-type terminal oxidase subunit CbaD.
       0.544
mntH
NRAMP family transport protein (probable substrate divalent metal cation).
  
 
 0.484
tp43
FeoB family transport protein.
 
 
 0.423
dnaK
Hsp70-type molecular chaperone DnaK; Acts as a chaperone.
 
 
 0.400
Your Current Organism:
Natronomonas pharaonis
NCBI taxonomy Id: 348780
Other names: N. pharaonis DSM 2160, Natronomonas pharaonis ATCC 35678, Natronomonas pharaonis DSM 2160, Natronomonas pharaonis Gabara, Natronomonas pharaonis JCM 8858, Natronomonas pharaonis str. DSM 2160, Natronomonas pharaonis strain DSM 2160
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