Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NP_0678A | NP_3988A | NP_0678A | NP_3988A | ABCE1 family ribosome recycling factor. | GNAT family acetyltransferase. | 0.526 |
NP_0678A | rpl18 | NP_0678A | NP_4892A | ABCE1 family ribosome recycling factor. | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.803 |
NP_0678A | rpl23 | NP_0678A | NP_4858A | ABCE1 family ribosome recycling factor. | 50S ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. | 0.725 |
NP_0678A | rpl24e | NP_0678A | NP_3664A | ABCE1 family ribosome recycling factor. | 50S ribosomal protein L24e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL24 family. | 0.621 |
NP_0678A | rpl3 | NP_0678A | NP_4854A | ABCE1 family ribosome recycling factor. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.798 |
NP_0678A | rpl32e | NP_0678A | NP_4888A | ABCE1 family ribosome recycling factor. | 50S ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family. | 0.556 |
NP_3986A | NP_3988A | NP_3986A | NP_3988A | Homolog to archaease. | GNAT family acetyltransferase. | 0.721 |
NP_3986A | ginS | NP_3986A | NP_3992A | Homolog to archaease. | DNA replication factor GINS. | 0.560 |
NP_3986A | priS | NP_3986A | NP_3990A | Homolog to archaease. | DNA primase small subunit; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. [...] | 0.589 |
NP_3988A | NP_0678A | NP_3988A | NP_0678A | GNAT family acetyltransferase. | ABCE1 family ribosome recycling factor. | 0.526 |
NP_3988A | NP_3986A | NP_3988A | NP_3986A | GNAT family acetyltransferase. | Homolog to archaease. | 0.721 |
NP_3988A | ginS | NP_3988A | NP_3992A | GNAT family acetyltransferase. | DNA replication factor GINS. | 0.791 |
NP_3988A | priS | NP_3988A | NP_3990A | GNAT family acetyltransferase. | DNA primase small subunit; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. [...] | 0.726 |
NP_3988A | rpl18 | NP_3988A | NP_4892A | GNAT family acetyltransferase. | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.490 |
NP_3988A | rpl23 | NP_3988A | NP_4858A | GNAT family acetyltransferase. | 50S ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. | 0.694 |
NP_3988A | rpl24e | NP_3988A | NP_3664A | GNAT family acetyltransferase. | 50S ribosomal protein L24e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL24 family. | 0.589 |
NP_3988A | rpl3 | NP_3988A | NP_4854A | GNAT family acetyltransferase. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.481 |
NP_3988A | rpl32e | NP_3988A | NP_4888A | GNAT family acetyltransferase. | 50S ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family. | 0.545 |
NP_3988A | rpl37e | NP_3988A | NP_4310A | GNAT family acetyltransferase. | 50S ribosomal protein L37e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. | 0.485 |
ginS | NP_3986A | NP_3992A | NP_3986A | DNA replication factor GINS. | Homolog to archaease. | 0.560 |
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