STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NP_4020AType IV pilus biogenesis complex membrane subunit. (671 aa)    
Predicted Functional Partners:
NP_4022A
Type IV pilus biogenesis complex ATPase subunit.
 
  
 0.938
NP_4010A
Probable secreted glycoprotein.
       0.857
NP_4012A
Probable secreted glycoprotein.
       0.857
NP_4016A
Uncharacterized protein.
       0.857
NP_4018A
Uncharacterized protein.
       0.857
NP_4014A
Uncharacterized protein.
       0.849
NP_1424A
DUF83 domain protein.
  
     0.731
pibD
Prepilin/preflagellin peptidase.
 
   
 0.730
NP_2022A
DUF447 family protein.
  
     0.720
pilA1
Pilin PilA; Locus_tag: NP_1954A; gene has in-frame stop codons and is truncated at the C-terminus; conceptual translation after in silico reconstruction: MLSNSVDTDTAKRSLVETYDPPNYDDPWDAVEDYERVQRYTAKHPQQGSQAVSTAVDL PRGRIRSWVDGDGMPDCYRCLQTALENGWILNGWEDDTARSMTTLAATLASGSINEHW TPTWVTDGDDEADALRHHADRANVVIEQAREAEDDRPAEWRPAESASVLGRELYTLGH RGDK; product: uncharacterized protein (nonfunctional).
  
   
 0.718
Your Current Organism:
Natronomonas pharaonis
NCBI taxonomy Id: 348780
Other names: N. pharaonis DSM 2160, Natronomonas pharaonis ATCC 35678, Natronomonas pharaonis DSM 2160, Natronomonas pharaonis Gabara, Natronomonas pharaonis JCM 8858, Natronomonas pharaonis str. DSM 2160, Natronomonas pharaonis strain DSM 2160
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