STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NP_4970AIron-sulfur protein; Gene truncated at the N-terminus; pseudocoding frame (nonfunctional). (711 aa)    
Predicted Functional Partners:
NP_4956A
TorD family protein.
 
     0.769
NP_4962A
Probable anaerobic dehydrogenase alpha subunit.
  
     0.625
NP_4972A
Uncharacterized protein.
       0.556
NP_4960A
Probable anaerobic dehydrogenase iron-sulfur-binding subunit.
 
     0.552
NP_3416A
Probable prenyl carboxy-lyase.
  
     0.548
blh
Beta-carotene 15,15'-dioxygenase Blh; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family.
  
     0.506
NP_4038A
DUF2339 family protein.
  
     0.479
tupA
ABC-type transport system periplasmic substrate-binding protein (probable substrate tungstate).
  
     0.477
sph1
Smc-like protein Sph1.
  
     0.472
nosL3
NosL family protein.
  
     0.468
Your Current Organism:
Natronomonas pharaonis
NCBI taxonomy Id: 348780
Other names: N. pharaonis DSM 2160, Natronomonas pharaonis ATCC 35678, Natronomonas pharaonis DSM 2160, Natronomonas pharaonis Gabara, Natronomonas pharaonis JCM 8858, Natronomonas pharaonis str. DSM 2160, Natronomonas pharaonis strain DSM 2160
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