Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
abc03sABC-type transport system periplasmic substrate-binding protein. (410 aa)    
Predicted Functional Partners:
abc03p
ABC-type transport system permease protein.
 
 
 0.999
abc24a
ABC-type transport system ATP-binding protein.
 
  
  0.958
aglD
Glycosyltransferase AglD.
       0.621
NP_1316A
AstE domain protein.
  
   
 0.569
NP_4516A
Flavin-dependent pyridine nucleotide oxidoreductase.
     
 0.513
nirK
Nitrite reductase, copper-containing.
 
   
 0.423
NP_4998A
Uncharacterized protein.
       0.416
Your Current Organism:
Natronomonas pharaonis
NCBI taxonomy Id: 348780
Other names: N. pharaonis DSM 2160, Natronomonas pharaonis ATCC 35678, Natronomonas pharaonis DSM 2160, Natronomonas pharaonis Gabara, Natronomonas pharaonis JCM 8858, Natronomonas pharaonis str. DSM 2160, Natronomonas pharaonis strain DSM 2160
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