STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV05_06041Serine-tRNA ligase. (485 aa)    
Predicted Functional Partners:
PV05_09078
Uncharacterized protein.
    
 
 0.910
PV05_03046
SGF29 C-terminal domain-containing protein.
    
 
 0.905
PV05_04258
TFIID_20kDa domain-containing protein.
    
 
 0.895
PV05_09202
Uncharacterized protein.
    
 
 0.895
PV05_01619
Uncharacterized protein.
    
 
 0.888
PV05_06557
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
   0.886
PV05_01742
USP domain-containing protein; Belongs to the peptidase C19 family.
    
   0.886
PV05_01246
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.869
PV05_05916
Glycine-tRNA ligase.
   
  
 0.860
TRM8
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
 
 0.827
Your Current Organism:
Exophiala xenobiotica
NCBI taxonomy Id: 348802
Other names: CBS 118157, E. xenobiotica
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