STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV05_04099AP_endonuc_2 domain-containing protein. (680 aa)    
Predicted Functional Partners:
PV05_03342
Exodeoxyribonuclease III.
    
 0.986
PV05_11691
Endo/exonuclease/phosphatase domain-containing protein.
    
 0.962
PV05_10194
AP_endonuc_2 domain-containing protein.
     
 0.884
NTH1
Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines.
  
 
 0.856
PV05_06077
ERCC4 domain-containing protein.
   
 
 0.828
PV05_08176
Uncharacterized protein.
   
 
 0.802
PV05_02194
DNA repair protein.
   
 
 0.792
PV05_03243
DNA polymerase.
    
 
 0.782
PV05_08658
ERCC4 domain-containing protein.
   
 
 0.669
PV05_11367
ENDO3c domain-containing protein.
   
 
 0.654
Your Current Organism:
Exophiala xenobiotica
NCBI taxonomy Id: 348802
Other names: CBS 118157, E. xenobiotica
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