STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2I0RIZ1Prolyl 3,4-dihydroxylase ofd1. (1049 aa)    
Predicted Functional Partners:
A0A2I0RZZ5
Elongation factor 3.
  
 
 0.993
A0A2I0RXP3
mRNA export factor elf1.
  
   0.920
A0A2I0S971
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.844
A0A2I0RPZ6
Trans-L-3-hydroxyproline dehydratase.
    
  0.768
A0A2I0RRS0
Oxygen-dependent coproporphyrinogen-III oxidase.
   
  
 0.663
A0A2I0RX36
tRNA (Guanine(26)-N(2))-dimethyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
   
 
 0.660
A0A2I0S7S3
Ribosome biogenesis protein tsr1-like protein.
   
    0.628
A0A2I0S470
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.602
A0A2I0RMR6
Ribosome biogenesis protein bms1.
   
    0.598
A0A2I0RZA5
ABC transporter ATP-binding protein ARB1.
   
   0.596
Your Current Organism:
Cercospora zeina
NCBI taxonomy Id: 348901
Other names: C. zeina, CBS 118820, CPC 11995, CPC 11995 (ex-type)
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