STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2I0RPB0Uncharacterized protein. (1715 aa)    
Predicted Functional Partners:
A0A2I0S9H8
U1 small nuclear ribonucleoprotein 70 kDa-like protein.
   
 
 0.928
A0A2I0S6I5
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 
 0.925
A0A2I0RS30
U2 small nuclear ribonucleoprotein A.
    
 0.915
A0A2I0RPK8
Small nuclear ribonucleoprotein Sm D2.
    
 
 0.900
A0A2I0S1J4
Small nuclear ribonucleoprotein-associated protein B.
    
 0.898
A0A2I0S2U9
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 
 0.891
A0A2I0RN55
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 
 0.890
A0A2I0RJ28
Small nuclear ribonucleoprotein G.
    
 
 0.868
A0A2I0RVE8
Nuclear cap-binding protein subunit 1.
    
 
 0.860
A0A2I0RJL8
Pre-mRNA-processing protein 40C.
    
 
 0.837
Your Current Organism:
Cercospora zeina
NCBI taxonomy Id: 348901
Other names: C. zeina, CBS 118820, CPC 11995, CPC 11995 (ex-type)
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