STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2I0RSV8Putative oligoribonuclease. (196 aa)    
Predicted Functional Partners:
A0A2I0RX69
RNA exonuclease 3.
   
 0.912
A0A2I0RX99
Putative exonuclease.
   
 0.891
A0A2I0RQB2
RNA exonuclease 4.
   
 0.775
A0A2I0RWT8
Uncharacterized protein.
   
 0.743
A0A2I0S3G3
Tethering factor for nuclear proteasome STS1; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins.
   
 0.694
A0A2I0S1X2
Phosphoglucomutase; Belongs to the phosphohexose mutase family.
 
    
 0.683
PAN2
PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...]
   
 0.660
A0A2I0RW94
CCA tRNA nucleotidyltransferase, mitochondrial; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
     
 0.550
A0A2I0RKI6
Uncharacterized protein.
      
 0.487
A0A2I0RVJ1
Uncharacterized protein.
  
 
 0.453
Your Current Organism:
Cercospora zeina
NCBI taxonomy Id: 348901
Other names: C. zeina, CBS 118820, CPC 11995, CPC 11995 (ex-type)
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