STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2I0S3Y6Putative RNA polymerase II subunit B1 CTD phosphatase rtr1. (274 aa)    
Predicted Functional Partners:
A0A2I0RJ63
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.978
A0A2I0RL34
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.978
A0A2I0RXD1
DNA-directed RNA polymerase II subunit rpb7.
    
 0.978
A0A2I0RXG0
DNA-directed RNA polymerase II subunit rpb4.
    
 0.978
A0A2I0S1M4
DNA-directed RNA polymerase II subunit RPB11.
    
 0.977
A0A2I0S8J6
DNA-directed RNA polymerase II subunit RPB3.
    
 0.976
A0A2I0S0Q2
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.973
A0A2I0RTT0
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.971
A0A2I0RUV8
DNA-directed RNA polymerase II subunit RPB9.
   
 0.971
A0A2I0RKC1
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
    
  0.968
Your Current Organism:
Cercospora zeina
NCBI taxonomy Id: 348901
Other names: C. zeina, CBS 118820, CPC 11995, CPC 11995 (ex-type)
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