STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2I0S6V5ATP-dependent RNA helicase DBP8; Belongs to the DEAD box helicase family. (511 aa)    
Predicted Functional Partners:
A0A2I0RHY3
Something about silencing protein 10.
   
 0.998
A0A2I0RM71
Putative U3 small nucleolar RNA-associated protein 7.
   
 0.994
A0A2I0RVC9
ATP-dependent RNA helicase rok1.
  
0.993
A0A2I0RGU4
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
   
 
 0.991
A0A2I0S2P5
Ribosomal RNA small subunit methyltransferase NEP1.
   
 0.991
A0A2I0S9C5
rRNA biogenesis protein rrp5.
   
 0.991
A0A2I0S3X0
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.990
A0A2I0S425
Putative nucleolar complex protein 14.
   
 0.990
A0A2I0S2H6
ATP-dependent rRNA helicase rrp3; Belongs to the DEAD box helicase family.
  
 
0.989
A0A2I0S733
Nucleolar complex protein 4.
   
 0.989
Your Current Organism:
Cercospora zeina
NCBI taxonomy Id: 348901
Other names: C. zeina, CBS 118820, CPC 11995, CPC 11995 (ex-type)
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