STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET31654.1Outer membrane lipoprotein. (203 aa)    
Predicted Functional Partners:
SET31626.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.790
SET31677.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB.
  
    0.730
SET31711.1
ATP-dependent DNA helicase DinG.
       0.712
SET72107.1
Glutamate decarboxylase.
  
   0.592
smg
Smg protein; Belongs to the Smg family.
  
     0.544
SES86570.1
Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
    
   0.471
SET31599.1
Long-chain acyl-CoA synthetase.
       0.438
SET87129.1
Hypothetical protein.
  
     0.434
Your Current Organism:
Thalassotalea agarivorans
NCBI taxonomy Id: 349064
Other names: BCRC 17492, DSM 19706, JCM 13379, T. agarivorans, Thalassomonas agarivorans, Thalassomonas agarivorans Jean et al. 2006, Thalassotalea agarivorans (Jean et al. 2006) Zhang et al. 2014, marine bacterium JAMB-A33, strain TMA1
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