STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET39677.1General secretion pathway protein D. (710 aa)    
Predicted Functional Partners:
SET39648.1
Type II secretion system protein C (GspC).
 
 
 0.997
SET39762.1
Type II secretion system protein G (GspG).
  
 0.979
SET39862.1
General secretion pathway protein J.
 
  
 0.952
SET39734.1
Type II secretion system protein F (GspF).
 
  
 0.949
SET39710.1
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.943
SET39829.1
General secretion pathway protein I.
 
  
 0.943
SET39893.1
General secretion pathway protein K.
 
   
 0.942
SET39951.1
General secretion pathway protein M.
 
  
 0.916
SET39919.1
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.914
SET39797.1
General secretion pathway protein H.
 
  
 0.902
Your Current Organism:
Thalassotalea agarivorans
NCBI taxonomy Id: 349064
Other names: BCRC 17492, DSM 19706, JCM 13379, T. agarivorans, Thalassomonas agarivorans, Thalassomonas agarivorans Jean et al. 2006, Thalassotalea agarivorans (Jean et al. 2006) Zhang et al. 2014, marine bacterium JAMB-A33, strain TMA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.