STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET48473.1Threonine/homoserine/homoserine lactone efflux protein. (211 aa)    
Predicted Functional Partners:
SET48443.1
Hypothetical protein.
       0.773
SET81757.1
Threonine/homoserine/homoserine lactone efflux protein.
  
    0.727
gltS
glutamate:Na+ symporter, ESS family; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
       0.563
SET48509.1
Hypothetical protein.
       0.550
SET48540.1
Bax protein.
       0.550
SET90661.1
L-lysine exporter family protein LysE/ArgO.
  
   
 0.457
SET48373.1
NhaP-type Na+/H+ or K+/H+ antiporter.
       0.406
SET48568.1
Hypothetical protein.
       0.405
Your Current Organism:
Thalassotalea agarivorans
NCBI taxonomy Id: 349064
Other names: BCRC 17492, DSM 19706, JCM 13379, T. agarivorans, Thalassomonas agarivorans, Thalassomonas agarivorans Jean et al. 2006, Thalassotalea agarivorans (Jean et al. 2006) Zhang et al. 2014, marine bacterium JAMB-A33, strain TMA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.