STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET51824.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (282 aa)    
Predicted Functional Partners:
SET51854.1
6-pyruvoyl tetrahydropterin synthase.
       0.791
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
  
    0.774
SES79946.1
Lipoprotein NlpD.
  
   
 0.716
SET86251.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
  
   
 0.624
SET18963.1
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.617
SET51913.1
Nucleoid-associated protein.
       0.590
SET51789.1
Hypothetical protein.
       0.578
SET51947.1
Hypothetical protein.
       0.434
Your Current Organism:
Thalassotalea agarivorans
NCBI taxonomy Id: 349064
Other names: BCRC 17492, DSM 19706, JCM 13379, T. agarivorans, Thalassomonas agarivorans, Thalassomonas agarivorans Jean et al. 2006, Thalassotalea agarivorans (Jean et al. 2006) Zhang et al. 2014, marine bacterium JAMB-A33, strain TMA1
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