Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SET61228.1 | SET61259.1 | SAMN05660429_02205 | SAMN05660429_02206 | cation:H+ antiporter. | Arabinose-5-phosphate isomerase. | 0.755 |
SET61228.1 | SET61292.1 | SAMN05660429_02205 | SAMN05660429_02207 | cation:H+ antiporter. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase); Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.705 |
SET61228.1 | SET61354.1 | SAMN05660429_02205 | SAMN05660429_02209 | cation:H+ antiporter. | Lipopolysaccharide export system protein LptA. | 0.705 |
SET61228.1 | SET61384.1 | SAMN05660429_02205 | SAMN05660429_02210 | cation:H+ antiporter. | Lipopolysaccharide export system ATP-binding protein. | 0.705 |
SET61228.1 | SET61414.1 | SAMN05660429_02205 | SAMN05660429_02211 | cation:H+ antiporter. | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.605 |
SET61228.1 | SET61468.1 | SAMN05660429_02205 | SAMN05660429_02213 | cation:H+ antiporter. | PTS IIA-like nitrogen-regulatory protein PtsN. | 0.540 |
SET61228.1 | SET61496.1 | SAMN05660429_02205 | SAMN05660429_02214 | cation:H+ antiporter. | UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities. | 0.540 |
SET61228.1 | SET61529.1 | SAMN05660429_02205 | SAMN05660429_02215 | cation:H+ antiporter. | HPr-like nitrogen-regulatory protein NPr. | 0.540 |
SET61228.1 | lptC | SAMN05660429_02205 | SAMN05660429_02208 | cation:H+ antiporter. | Lipopolysaccharide export system protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family. | 0.705 |
SET61259.1 | SET61228.1 | SAMN05660429_02206 | SAMN05660429_02205 | Arabinose-5-phosphate isomerase. | cation:H+ antiporter. | 0.755 |
SET61259.1 | SET61292.1 | SAMN05660429_02206 | SAMN05660429_02207 | Arabinose-5-phosphate isomerase. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase); Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.997 |
SET61259.1 | SET61354.1 | SAMN05660429_02206 | SAMN05660429_02209 | Arabinose-5-phosphate isomerase. | Lipopolysaccharide export system protein LptA. | 0.811 |
SET61259.1 | SET61384.1 | SAMN05660429_02206 | SAMN05660429_02210 | Arabinose-5-phosphate isomerase. | Lipopolysaccharide export system ATP-binding protein. | 0.918 |
SET61259.1 | SET61414.1 | SAMN05660429_02206 | SAMN05660429_02211 | Arabinose-5-phosphate isomerase. | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.706 |
SET61259.1 | SET61468.1 | SAMN05660429_02206 | SAMN05660429_02213 | Arabinose-5-phosphate isomerase. | PTS IIA-like nitrogen-regulatory protein PtsN. | 0.644 |
SET61259.1 | SET61496.1 | SAMN05660429_02206 | SAMN05660429_02214 | Arabinose-5-phosphate isomerase. | UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities. | 0.641 |
SET61259.1 | SET61529.1 | SAMN05660429_02206 | SAMN05660429_02215 | Arabinose-5-phosphate isomerase. | HPr-like nitrogen-regulatory protein NPr. | 0.641 |
SET61259.1 | lptC | SAMN05660429_02206 | SAMN05660429_02208 | Arabinose-5-phosphate isomerase. | Lipopolysaccharide export system protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family. | 0.865 |
SET61292.1 | SET61228.1 | SAMN05660429_02207 | SAMN05660429_02205 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase); Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | cation:H+ antiporter. | 0.705 |
SET61292.1 | SET61259.1 | SAMN05660429_02207 | SAMN05660429_02206 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase); Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Arabinose-5-phosphate isomerase. | 0.997 |
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