STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM04080.1methylmalonyl-CoA decarboxylase alpha subunit. (509 aa)    
Predicted Functional Partners:
SDM30829.1
acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 0.999
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
 
 0.967
SDM04024.1
glutaconyl-CoA decarboxylase.
 
 
 0.955
SDN14360.1
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
 
 0.909
SDN19392.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.899
SDN22311.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.899
SDN30691.1
Pyruvate:ferredoxin oxidoreductase, beta subunit.
  
 
 0.899
SDN43134.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.899
SDN52176.1
Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg.
  
 
 0.899
SDM04580.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.887
Your Current Organism:
Megasphaera paucivorans
NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.