Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM06252.1 | SDM06799.1 | SAMN05660299_00118 | SAMN05660299_00132 | Hypothetical protein. | Uncharacterized conserved protein YacL, contains PIN and TRAM domains. | 0.422 |
SDM06687.1 | SDM06799.1 | SAMN05660299_00129 | SAMN05660299_00132 | Esterase PHB depolymerase. | Uncharacterized conserved protein YacL, contains PIN and TRAM domains. | 0.737 |
SDM06687.1 | SDM06834.1 | SAMN05660299_00129 | SAMN05660299_00133 | Esterase PHB depolymerase. | Hypothetical protein. | 0.428 |
SDM06687.1 | gltX | SAMN05660299_00129 | SAMN05660299_00130 | Esterase PHB depolymerase. | Nondiscriminating glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.773 |
SDM06687.1 | ispDF | SAMN05660299_00129 | SAMN05660299_00131 | Esterase PHB depolymerase. | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF). | 0.737 |
SDM06799.1 | SDM06252.1 | SAMN05660299_00132 | SAMN05660299_00118 | Uncharacterized conserved protein YacL, contains PIN and TRAM domains. | Hypothetical protein. | 0.422 |
SDM06799.1 | SDM06687.1 | SAMN05660299_00132 | SAMN05660299_00129 | Uncharacterized conserved protein YacL, contains PIN and TRAM domains. | Esterase PHB depolymerase. | 0.737 |
SDM06799.1 | SDM06834.1 | SAMN05660299_00132 | SAMN05660299_00133 | Uncharacterized conserved protein YacL, contains PIN and TRAM domains. | Hypothetical protein. | 0.445 |
SDM06799.1 | SDM06956.1 | SAMN05660299_00132 | SAMN05660299_00136 | Uncharacterized conserved protein YacL, contains PIN and TRAM domains. | Protein arginine kinase. | 0.600 |
SDM06799.1 | SDM06983.1 | SAMN05660299_00132 | SAMN05660299_00137 | Uncharacterized conserved protein YacL, contains PIN and TRAM domains. | Protein-arginine kinase activator protein McsA. | 0.609 |
SDM06799.1 | SDM07016.1 | SAMN05660299_00132 | SAMN05660299_00138 | Uncharacterized conserved protein YacL, contains PIN and TRAM domains. | Transcriptional regulator CtsR. | 0.660 |
SDM06799.1 | SDN12218.1 | SAMN05660299_00132 | SAMN05660299_02146 | Uncharacterized conserved protein YacL, contains PIN and TRAM domains. | spoIIIJ-associated protein. | 0.455 |
SDM06799.1 | gltX | SAMN05660299_00132 | SAMN05660299_00130 | Uncharacterized conserved protein YacL, contains PIN and TRAM domains. | Nondiscriminating glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.776 |
SDM06799.1 | ispDF | SAMN05660299_00132 | SAMN05660299_00131 | Uncharacterized conserved protein YacL, contains PIN and TRAM domains. | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF). | 0.922 |
SDM06799.1 | radA | SAMN05660299_00132 | SAMN05660299_00134 | Uncharacterized conserved protein YacL, contains PIN and TRAM domains. | DNA repair protein RadA/Sms; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.748 |
SDM06834.1 | SDM06687.1 | SAMN05660299_00133 | SAMN05660299_00129 | Hypothetical protein. | Esterase PHB depolymerase. | 0.428 |
SDM06834.1 | SDM06799.1 | SAMN05660299_00133 | SAMN05660299_00132 | Hypothetical protein. | Uncharacterized conserved protein YacL, contains PIN and TRAM domains. | 0.445 |
SDM06834.1 | SDM06956.1 | SAMN05660299_00133 | SAMN05660299_00136 | Hypothetical protein. | Protein arginine kinase. | 0.450 |
SDM06834.1 | SDM06983.1 | SAMN05660299_00133 | SAMN05660299_00137 | Hypothetical protein. | Protein-arginine kinase activator protein McsA. | 0.450 |
SDM06834.1 | SDM07016.1 | SAMN05660299_00133 | SAMN05660299_00138 | Hypothetical protein. | Transcriptional regulator CtsR. | 0.415 |
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