STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM15096.1Phage tail tape measure protein, TP901 family, core region. (925 aa)    
Predicted Functional Partners:
SDM15211.1
Protein of unknown function.
 
    0.880
SDM15277.1
Hypothetical protein.
  
  
 0.843
SDM15242.1
Uncharacterized phage protein gp47/JayE.
 
     0.839
SDM15123.1
Hypothetical protein.
 
     0.829
SDM15154.1
Hypothetical protein.
 
  
 0.820
SDM15396.1
Hypothetical protein.
     
 0.779
SDM15183.1
Protein of unknown function.
       0.778
SDM15304.1
Hypothetical protein.
       0.773
SDM15431.1
Hypothetical protein.
     
 0.762
SDM15340.1
Hypothetical protein.
       0.737
Your Current Organism:
Megasphaera paucivorans
NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.