STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM15846.1Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (590 aa)    
Predicted Functional Partners:
SDM15883.1
Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains.
 
  
  0.968
SDM62723.1
Two component transcriptional regulator, LytTR family.
 
 0.924
SDN53194.1
Two component transcriptional regulator, LytTR family.
 
 0.911
SDM35692.1
Ligand-binding sensor domain-containing protein.
  
  
  0.691
SDN28483.1
Hypothetical protein.
  
 0.643
SDM24840.1
AraC-type DNA-binding protein.
  
  
  0.579
SDN15648.1
AraC-type DNA-binding protein.
  
  
  0.559
SDM24581.1
AraC-type DNA-binding protein.
  
  
  0.538
SDM15812.1
PsbP protein.
       0.455
SDM15926.1
8-amino-7-oxononanoate synthase.
     
 0.445
Your Current Organism:
Megasphaera paucivorans
NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341
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