STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM28706.1Hypothetical protein. (39 aa)    
Predicted Functional Partners:
SDM28669.1
NitT/TauT family transport system permease protein.
       0.773
SDM28627.1
NitT/TauT family transport system ATP-binding protein.
       0.752
SDM28743.1
Amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3).
       0.458
SDM28513.1
Rod shape-determining protein MreD.
       0.429
SDM28551.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.429
SDM28595.1
Rod shape-determining protein MreB.
       0.429
Your Current Organism:
Megasphaera paucivorans
NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.