STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM40678.1Amidohydrolase. (373 aa)    
Predicted Functional Partners:
SDM40643.1
Amidohydrolase.
 
    
0.752
SDM18485.1
Glutamate synthase (ferredoxin).
    
  0.646
SDM40607.1
Hypothetical protein.
 
     0.622
SDM40577.1
Spore maturation protein SpmB.
 
     0.608
SDM40714.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.445
Your Current Organism:
Megasphaera paucivorans
NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.