STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM56447.1Site-specific DNA recombinase. (624 aa)    
Predicted Functional Partners:
SDM14355.1
Protein of unknown function.
  
     0.713
SDM14323.1
Protein of unknown function.
  
     0.707
SDM14551.1
Hypothetical protein.
  
     0.706
SDM14585.1
SNF2 family N-terminal domain-containing protein.
 
     0.701
SDM14387.1
DNA polymerase.
  
     0.678
SDM14684.1
Uncharacterized protein YjcR.
  
    0.675
SDM56483.1
Hypothetical protein.
       0.600
SDM56610.1
RNA polymerase sigma factor, sigma-70 family.
 
   
 0.595
SDN03713.1
Hypothetical protein.
  
     0.578
SDM56513.1
Hypothetical protein.
       0.539
Your Current Organism:
Megasphaera paucivorans
NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.