STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM59262.1Hypothetical protein. (119 aa)    
Predicted Functional Partners:
SDM59311.1
Tfp pilus assembly protein FimT.
       0.778
SDM59358.1
Type IV leader peptidase family protein.
       0.778
SDM59186.1
Hypothetical protein.
       0.775
SDM59225.1
Hypothetical protein.
       0.775
SDM59139.1
Hypothetical protein.
       0.744
SDM59398.1
Type II secretion system protein G (GspG).
       0.741
SDM59097.1
Hypothetical protein.
       0.733
SDM59058.1
Hypothetical protein.
       0.725
SDM59443.1
Type IV pilus assembly protein PilC.
       0.665
SDM59480.1
Twitching motility protein PilT.
       0.665
Your Current Organism:
Megasphaera paucivorans
NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.