node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplD | rplF | SAMN05660299_01761 | SAMN05660299_01747 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.998 |
rplD | rplI | SAMN05660299_01761 | SAMN05660299_01321 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Large subunit ribosomal protein L9; Binds to the 23S rRNA. | 0.996 |
rplD | rplM | SAMN05660299_01761 | SAMN05660299_00876 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
rplD | rplO | SAMN05660299_01761 | SAMN05660299_01743 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.998 |
rplD | rplQ | SAMN05660299_01761 | SAMN05660299_01734 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Large subunit ribosomal protein L17. | 0.997 |
rplD | rplU | SAMN05660299_01761 | SAMN05660299_01430 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.995 |
rplD | rpmA | SAMN05660299_01761 | SAMN05660299_01428 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.996 |
rplD | rpsD | SAMN05660299_01761 | SAMN05660299_01244 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplD | rpsI | SAMN05660299_01761 | SAMN05660299_00875 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.997 |
rplD | rpsR | SAMN05660299_01761 | SAMN05660299_02360 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Small subunit ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.994 |
rplF | rplD | SAMN05660299_01747 | SAMN05660299_01761 | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.998 |
rplF | rplI | SAMN05660299_01747 | SAMN05660299_01321 | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Large subunit ribosomal protein L9; Binds to the 23S rRNA. | 0.995 |
rplF | rplM | SAMN05660299_01747 | SAMN05660299_00876 | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
rplF | rplO | SAMN05660299_01747 | SAMN05660299_01743 | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
rplF | rplQ | SAMN05660299_01747 | SAMN05660299_01734 | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Large subunit ribosomal protein L17. | 0.997 |
rplF | rplU | SAMN05660299_01747 | SAMN05660299_01430 | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.995 |
rplF | rpmA | SAMN05660299_01747 | SAMN05660299_01428 | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.990 |
rplF | rpsD | SAMN05660299_01747 | SAMN05660299_01244 | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.998 |
rplF | rpsI | SAMN05660299_01747 | SAMN05660299_00875 | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.996 |
rplF | rpsR | SAMN05660299_01747 | SAMN05660299_02360 | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Small subunit ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.994 |