STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM70439.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (329 aa)    
Predicted Functional Partners:
SDM53198.1
Hypothetical protein.
  
     0.707
SDM48498.1
Lipopolysaccharide export system protein LptC.
  
     0.691
SDM76730.1
LPS-assembly protein.
 
    0.681
SDM28513.1
Rod shape-determining protein MreD.
  
     0.675
SDM70481.1
Helix-turn-helix domain-containing protein.
  
  
 0.664
SDM45964.1
Translocation and assembly module TamB.
  
     0.660
SDM48538.1
Lipopolysaccharide export system protein LptA.
  
     0.647
SDM81872.1
Hypothetical protein.
  
     0.629
hslV
ATP-dependent HslUV protease, peptidase subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
  
  
 0.620
SDM18193.1
Uncharacterized protein YhaN.
  
     0.578
Your Current Organism:
Megasphaera paucivorans
NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.