STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM82059.1Cupin domain-containing protein. (147 aa)    
Predicted Functional Partners:
SDN36884.1
Ribulose-bisphosphate carboxylase large chain.
     0.815
SDM82097.1
Carbon-nitrogen hydrolase.
  
    0.721
SDM82138.1
Hypothetical protein.
       0.676
SDM68331.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
 
 0.675
SDM82173.1
Amidohydrolase; Belongs to the peptidase M20A family.
       0.653
SDM62485.1
Hypothetical protein.
  
     0.620
SDM82024.1
Cd2+/Zn2+-exporting ATPase.
  
    0.524
SDN15937.1
Chorismate mutase / prephenate dehydratase.
  
 
 0.503
SDM33387.1
Uncharacterized membrane protein.
  
     0.479
SDM97991.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
 0.479
Your Current Organism:
Megasphaera paucivorans
NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.