STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM85615.1Pilus assembly protein CpaE. (279 aa)    
Predicted Functional Partners:
SDM85693.1
Pilus assembly protein CpaB.
 
  
 0.979
SDM85540.1
Tight adherence protein B.
 
  
 0.966
SDM85654.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.943
SDM85378.1
Tight adherence protein C.
 
  
 0.936
SDM85413.1
Pilus assembly protein CpaF.
 
  
 0.887
SDM85298.1
Putative Flp pilus-assembly TadE/G-like.
 
  
 0.848
SDM85339.1
Hypothetical protein.
 
     0.818
SDM57535.1
Type IV secretion system protein VirB11.
 
  
 0.812
SDM85574.1
Pilus assembly protein CpaE.
 
    
0.744
SDM85455.1
TadE-like protein.
  
  
 0.704
Your Current Organism:
Megasphaera paucivorans
NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.