STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN04820.1Mor transcription activator family protein. (91 aa)    
Predicted Functional Partners:
SDM56691.1
Diamine N-acetyltransferase.
  
     0.722
SDN04878.1
Methyltransferase domain-containing protein.
 
     0.696
SDM15211.1
Protein of unknown function.
  
     0.569
SDM15123.1
Hypothetical protein.
  
     0.561
SDN19436.1
Chloramphenicol O-acetyltransferase type B.
  
     0.528
SDN04732.1
Chloramphenicol O-acetyltransferase type A.
 
     0.526
SDN04402.1
YoaP-like.
  
    0.510
SDM15242.1
Uncharacterized phage protein gp47/JayE.
  
     0.505
rsgA-2
Ribosome biogenesis GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.503
SDM15277.1
Hypothetical protein.
  
     0.502
Your Current Organism:
Megasphaera paucivorans
NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.