SDN10978.1 protein (Megasphaera paucivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDN10978.1

RraA famliy. (225 aa)

Predicted Functional Partners:

SDN10941.1

0.900

SDN11021.1

0.760

SDN11058.1

0.714

SDM54641.1

0.668

SDM40923.1

0.511

SDN08433.1

0.511

SDM48380.1

0.504

SDM93311.1

0.477

SDM59895.1

0.466

SDM53714.1

0.462

Your Current Organism:

Megasphaera paucivorans

NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDM40923.1	SDN08433.1	SAMN05660299_00828	SAMN05660299_02073	ATP-dependent RNA helicase DeaD.	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	0.809
SDM40923.1	SDN10978.1	SAMN05660299_00828	SAMN05660299_02129	ATP-dependent RNA helicase DeaD.	RraA famliy.	0.511
SDM48380.1	SDN10978.1	SAMN05660299_00979	SAMN05660299_02129	Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.	RraA famliy.	0.504
SDM53714.1	SDM59895.1	SAMN05660299_01080	SAMN05660299_01200	Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).	0.499
SDM53714.1	SDN10978.1	SAMN05660299_01080	SAMN05660299_02129	Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.	RraA famliy.	0.462
SDM54641.1	SDN10978.1	SAMN05660299_01104	SAMN05660299_02129	Hypothetical protein.	RraA famliy.	0.668
SDM59895.1	SDM53714.1	SAMN05660299_01200	SAMN05660299_01080	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).	Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.	0.499
SDM59895.1	SDN10978.1	SAMN05660299_01200	SAMN05660299_02129	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).	RraA famliy.	0.466
SDM93311.1	SDN10978.1	SAMN05660299_01780	SAMN05660299_02129	5-methyltetrahydrofolate--homocysteine methyltransferase.	RraA famliy.	0.477
SDM93311.1	SDN11058.1	SAMN05660299_01780	SAMN05660299_02131	5-methyltetrahydrofolate--homocysteine methyltransferase.	Sugar phosphate permease.	0.465
SDN08433.1	SDM40923.1	SAMN05660299_02073	SAMN05660299_00828	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	ATP-dependent RNA helicase DeaD.	0.809
SDN08433.1	SDN10978.1	SAMN05660299_02073	SAMN05660299_02129	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	RraA famliy.	0.511
SDN10941.1	SDN10978.1	SAMN05660299_02128	SAMN05660299_02129	3-hydroxyisobutyrate dehydrogenase.	RraA famliy.	0.900
SDN10941.1	SDN11021.1	SAMN05660299_02128	SAMN05660299_02130	3-hydroxyisobutyrate dehydrogenase.	Predicted amidohydrolase.	0.600
SDN10941.1	SDN11058.1	SAMN05660299_02128	SAMN05660299_02131	3-hydroxyisobutyrate dehydrogenase.	Sugar phosphate permease.	0.600
SDN10978.1	SDM40923.1	SAMN05660299_02129	SAMN05660299_00828	RraA famliy.	ATP-dependent RNA helicase DeaD.	0.511
SDN10978.1	SDM48380.1	SAMN05660299_02129	SAMN05660299_00979	RraA famliy.	Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.	0.504
SDN10978.1	SDM53714.1	SAMN05660299_02129	SAMN05660299_01080	RraA famliy.	Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.	0.462
SDN10978.1	SDM54641.1	SAMN05660299_02129	SAMN05660299_01104	RraA famliy.	Hypothetical protein.	0.668
SDN10978.1	SDM59895.1	SAMN05660299_02129	SAMN05660299_01200	RraA famliy.	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).	0.466