STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN14577.1Muramoyltetrapeptide carboxypeptidase. (311 aa)    
Predicted Functional Partners:
SDN14552.1
Oligopeptide transport system substrate-binding protein.
  
  
 0.808
SDM04580.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.802
SDM94797.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
    
  0.802
SDN33263.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.802
SDN37963.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.802
SDN14425.1
Oligopeptide transport system permease protein.
  
    0.769
SDN14490.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  
 0.769
SDN14459.1
Oligopeptide transport system permease protein.
  
    0.767
SDN14521.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.759
SDN14612.1
Amidohydrolase; Belongs to the peptidase M20A family.
       0.723
Your Current Organism:
Megasphaera paucivorans
NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.