STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN43560.1L-alanine-DL-glutamate epimerase. (409 aa)    
Predicted Functional Partners:
SDN06391.1
O-succinylbenzoate synthase.
  
     0.685
SDN48258.1
D-glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
  0.582
SDN48130.1
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
  0.573
menC
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
     0.561
SDM16035.1
6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
  
  
  0.506
SDN43513.1
Uncharacterised protein family (UPF0236).
       0.498
SDN06545.1
2-dehydro-3-deoxygluconokinase.
    
 0.474
SDN45289.1
2-dehydro-3-deoxy-L-rhamnonate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.450
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
    
 0.449
SDM68331.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
 
 0.449
Your Current Organism:
Megasphaera paucivorans
NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.