STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN49845.1Diguanylate cyclase (GGDEF) domain-containing protein. (299 aa)    
Predicted Functional Partners:
SDM79039.1
EAL domain-containing protein.
 
 0.967
SDM93036.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.954
SDM54709.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 0.878
SDN28528.1
Diguanylate phosphodiesterase.
 
 
 0.875
SDM67196.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.860
SDM53883.1
Diguanylate cyclase (GGDEF) domain-containing protein.
0.831
SDM78988.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.831
SDM51384.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
0.830
SDM17675.1
HD domain-containing protein.
  
 0.823
SDM04893.1
HDIG domain-containing protein.
  
 0.767
Your Current Organism:
Megasphaera paucivorans
NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341
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