Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABQ94150.1 | ABQ94151.1 | PsycPRwf_1201 | PsycPRwf_1202 | PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase. | PFAM: GCN5-related N-acetyltransferase. | 0.591 |
ABQ94151.1 | ABQ94150.1 | PsycPRwf_1202 | PsycPRwf_1201 | PFAM: GCN5-related N-acetyltransferase. | PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase. | 0.591 |
ABQ94151.1 | ABQ94152.1 | PsycPRwf_1202 | PsycPRwf_1203 | PFAM: GCN5-related N-acetyltransferase. | Hypothetical protein. | 0.498 |
ABQ94151.1 | ABQ94153.1 | PsycPRwf_1202 | PsycPRwf_1204 | PFAM: GCN5-related N-acetyltransferase. | Sterol desaturase-like protein. | 0.457 |
ABQ94151.1 | ABQ94629.1 | PsycPRwf_1202 | PsycPRwf_1689 | PFAM: GCN5-related N-acetyltransferase. | TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I). | 0.566 |
ABQ94151.1 | ftsH | PsycPRwf_1202 | PsycPRwf_0535 | PFAM: GCN5-related N-acetyltransferase. | Membrane protease FtsH catalytic subunit; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.452 |
ABQ94152.1 | ABQ94151.1 | PsycPRwf_1203 | PsycPRwf_1202 | Hypothetical protein. | PFAM: GCN5-related N-acetyltransferase. | 0.498 |
ABQ94152.1 | ABQ94153.1 | PsycPRwf_1203 | PsycPRwf_1204 | Hypothetical protein. | Sterol desaturase-like protein. | 0.473 |
ABQ94153.1 | ABQ94151.1 | PsycPRwf_1204 | PsycPRwf_1202 | Sterol desaturase-like protein. | PFAM: GCN5-related N-acetyltransferase. | 0.457 |
ABQ94153.1 | ABQ94152.1 | PsycPRwf_1204 | PsycPRwf_1203 | Sterol desaturase-like protein. | Hypothetical protein. | 0.473 |
ABQ94629.1 | ABQ94151.1 | PsycPRwf_1689 | PsycPRwf_1202 | TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I). | PFAM: GCN5-related N-acetyltransferase. | 0.566 |
ftsH | ABQ94151.1 | PsycPRwf_0535 | PsycPRwf_1202 | Membrane protease FtsH catalytic subunit; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | PFAM: GCN5-related N-acetyltransferase. | 0.452 |