STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0008PFAM: aminotransferase, class V; KEGG: aeh:Mlg_1413 aminotransferase, class V. (376 aa)    
Predicted Functional Partners:
Hhal_0280
PFAM: NifQ family protein; KEGG: dar:Daro_1448 NifQ.
  
 
 0.964
Hhal_0538
KEGG: aeh:Mlg_0726 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.907
Hhal_0537
Iron-regulated ABC transporter permease protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: aeh:Mlg_0727 FeS assembly protein SufD.
 
 
 0.852
Hhal_0539
Iron-regulated ABC transporter membrane component SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: aeh:Mlg_0725 FeS assembly protein SufB.
 
 
 0.850
Hhal_1662
Cysteine desulfuration protein SufE; PFAM: Fe-S metabolism associated SufE; KEGG: aeh:Mlg_1491 Fe-S metabolism associated SufE.
 
 
 0.766
Hhal_2393
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: aeh:Mlg_2849 endonuclease/exonuclease/phosphatase.
  
 
   0.725
Hhal_0066
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rpa:RPA4721 possible+E2677 pyruvate-flavodoxin oxidoreductase.
  
  
 0.690
Hhal_0009
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KR; KEGG: aeh:Mlg_1401 short-chain dehydrogenase/reductase SDR.
  
 
 0.472
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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