STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0123KEGG: bpm:BURPS1710b_2719 hypothetical protein. (317 aa)    
Predicted Functional Partners:
Hhal_0122
Exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: aeh:Mlg_1819 single-stranded-DNA-specific exonuclease RecJ.
       0.827
Hhal_0127
PFAM: protein of unknown function DUF498; KEGG: aeh:Mlg_1824 protein of unknown function DUF498.
 
     0.785
Hhal_2264
KEGG: aeh:Mlg_2791 hypothetical protein.
  
     0.741
Hhal_2330
PFAM: protein of unknown function DUF185; KEGG: aeh:Mlg_2524 protein of unknown function DUF185.
  
     0.722
Hhal_0125
PFAM: oxidoreductase domain protein; homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase, NAD-binding; KEGG: aeh:Mlg_1822 homoserine dehydrogenase.
       0.709
Hhal_0124
L-threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.
       0.702
bioC
Biotin biosynthesis protein BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.
  
     0.655
Hhal_0126
Aminotransferase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: aeh:Mlg_1823 aminotransferase, class I and II.
       0.603
Hhal_2332
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: aeh:Mlg_0029 NAD-dependent epimerase/dehydratase.
  
     0.545
Hhal_2405
PFAM: protein of unknown function DUF526; KEGG: aeh:Mlg_0081 protein of unknown function DUF526.
  
     0.458
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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