STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0136PFAM: beta-lactamase domain protein; KEGG: sru:SRU_1341 metallo-beta-lactamase-related protein. (305 aa)    
Predicted Functional Partners:
Hhal_0135
PFAM: AMP-dependent synthetase and ligase; KEGG: aeh:Mlg_1578 AMP-dependent synthetase and ligase.
 
     0.709
Hhal_0134
KEGG: aeh:Mlg_1813 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1.
  
    0.670
Hhal_0137
PFAM: glucose sorbosone dehydrogenase; KEGG: aeh:Mlg_2737 glucose sorbosone dehydrogenase.
  
    0.560
Hhal_0138
PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_0431 putative ATP-binding component of a transport system.
       0.552
Hhal_0133
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: aeh:Mlg_1887 transcriptional regulator, BadM/Rrf2 family.
       0.464
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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