STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0141KEGG: sfu:Sfum_0602 hypothetical protein. (251 aa)    
Predicted Functional Partners:
Hhal_0140
PFAM: iron-containing alcohol dehydrogenase; KEGG: syg:sync_2669 iron-containing alcohol dehydrogenase.
       0.773
Hhal_0623
KEGG: vch:VC1899 hypothetical protein.
  
     0.634
Hhal_0142
Hypothetical protein; KEGG: ade:Adeh_2705 response regulator receiver.
       0.493
Hhal_1559
KEGG: eba:ebA4312 hypothetical protein.
  
     0.468
Hhal_0143
PFAM: heat shock protein DnaJ domain protein.
       0.432
Hhal_0144
GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...]
       0.432
Hhal_0145
PFAM: Heat shock protein 70; KEGG: sus:Acid_6320 heat shock protein 70.
       0.432
Hhal_0146
Hypothetical protein.
       0.432
Hhal_0781
Hypothetical protein; KEGG: ssn:SSO_P229 putative glycosyltransferase.
  
     0.426
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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