Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Hhal_0147PFAM: peptidase S41; WD40 domain protein beta Propeller; KEGG: sru:SRU_2235 MdsD protein, putative. (1193 aa)    
Predicted Functional Partners:
Hhal_1530
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aeh:Mlg_0156 tetratricopeptide TPR_2 repeat protein.
  
 
 0.700
cpoB
Tetratricopeptide domain protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
 0.679
Hhal_1997
Plasmid segregation actin-type ATPase ParM; KEGG: sth:STH3287 hypothetical protein.
  
  
 0.658
Hhal_0154
Conserved hypothetical protein; KEGG: pca:Pcar_2821 rhs element protein VgrE.
  
     0.623
Hhal_1412
PFAM: OmpA/MotB domain protein; KEGG: aeh:Mlg_1455 OmpA/MotB domain protein.
  
 
 0.623
pal
OmpA/MotB domain protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.623
Hhal_1428
Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: aeh:Mlg_1826 peptidase M23B.
  
  
 0.615
Hhal_0162
PFAM: ImpA domain protein; KEGG: pca:Pcar_2813 hypothetical protein.
  
     0.609
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
 
 0.583
Hhal_2050
PFAM: porin, Gram-negative type; KEGG: aeh:Mlg_0593 porin, gram-negative type.
  
 
 
 0.547
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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