STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0160PFAM: protein of unknown function DUF877; KEGG: pca:Pcar_2815 hypothetical protein. (504 aa)    
Predicted Functional Partners:
Hhal_0161
PFAM: Uncharacterised conserved protein UCP028301; KEGG: pca:Pcar_2814 hypothetical protein.
 
 
 0.999
Hhal_0159
PFAM: protein of unknown function DUF796; KEGG: pca:Pcar_2816 secreted protein Hcp.
 
 0.997
Hhal_0164
KEGG: pca:Pcar_2810 hypothetical protein.
 
  
 0.994
Hhal_0157
PFAM: protein of unknown function DUF879; KEGG: pca:Pcar_2818 hypothetical protein.
 
  
 0.986
Hhal_0166
KEGG: pca:Pcar_2808 hypothetical protein.
 
  
 0.986
Hhal_0165
PFAM: protein of unknown function DUF876; KEGG: pca:Pcar_2809 hypothetical protein.
 
  
 0.985
Hhal_0163
PFAM: protein of unknown function DUF1215; KEGG: pca:Pcar_2811 hypothetical protein.
 
  
 0.983
Hhal_0162
PFAM: ImpA domain protein; KEGG: pca:Pcar_2813 hypothetical protein.
 
  
 0.972
Hhal_0155
TIGRFAM: Rhs element Vgr protein; KEGG: pca:Pcar_2821 rhs element protein VgrE.
 
  
 0.939
Hhal_0154
Conserved hypothetical protein; KEGG: pca:Pcar_2821 rhs element protein VgrE.
 
  
 0.903
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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