STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0200Hypothetical protein. (325 aa)    
Predicted Functional Partners:
Hhal_0201
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: neu:NE1196 putative ABC transporter, permease protein, cysTW family.
  
 
 0.925
Hhal_0202
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpm:BURPS1710b_0934 putative ATP-binding transmembrane ABC transporter.
  
 
 0.925
Hhal_2357
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: abo:ABO_1888 sulfonate ABC transporter permease protein.
  
 
 0.686
Hhal_2358
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psb:Psyr_3974 ABC transporter.
  
 
 0.685
Hhal_0199
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: rpe:RPE_1208 nitrogen fixation-related protein.
  
    0.465
Hhal_0198
PFAM: Ankyrin; KEGG: aeh:Mlg_2666 ankyrin.
       0.415
cysC-2
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
  
 0.407
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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