STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0201PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: neu:NE1196 putative ABC transporter, permease protein, cysTW family. (253 aa)    
Predicted Functional Partners:
Hhal_0202
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpm:BURPS1710b_0934 putative ATP-binding transmembrane ABC transporter.
  
 0.978
Hhal_0200
Hypothetical protein.
  
  
 0.913
Hhal_2356
KEGG: abo:ABO_1887 sulfonate ABC transporter periplasmic-binding protein.
 
  
 0.819
Hhal_2358
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psb:Psyr_3974 ABC transporter.
 
  
 0.818
Hhal_0234
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BRA0739 glycine betaine/L-proline ABC transporter, permease protein, putative.
  
     0.692
Hhal_2357
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: abo:ABO_1888 sulfonate ABC transporter permease protein.
  
     0.672
Hhal_0233
KEGG: hch:HCH_01361 ABC-type proline/glycine betaine transport system, ATPase component; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase.
 
     0.607
Hhal_0235
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bms:BRA0738 glycine betaine/L-proline ABC transporter, periplasmic glycine betaine-binding protein, putative.
  
     0.495
Hhal_0199
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: rpe:RPE_1208 nitrogen fixation-related protein.
  
    0.468
Hhal_0198
PFAM: Ankyrin; KEGG: aeh:Mlg_2666 ankyrin.
       0.415
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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