STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0275PFAM: protein of unknown function DUF411; KEGG: aha:AHA_0347 hypothetical protein. (156 aa)    
Predicted Functional Partners:
Hhal_0276
KEGG: dar:Daro_1418 hypothetical protein.
       0.536
Hhal_0277
NifZ family protein; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; NifZ family protein; KEGG: dar:Daro_1394 NifZ.
       0.536
Hhal_0278
Hypothetical protein; KEGG: dar:Daro_1395 nitrogen fixation protein NifW.
       0.536
Hhal_0279
TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: mag:amb1562 isopropylmalate/homocitrate/citramalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.529
Hhal_0280
PFAM: NifQ family protein; KEGG: dar:Daro_1448 NifQ.
       0.529
Hhal_0281
TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM domain protein; KEGG: dar:Daro_1454 nitrogenase cofactor biosynthesis protein NifB.
       0.529
nifH
Mo-nitrogenase iron protein subunit NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
       0.401
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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