STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0282Transcriptional regulator, NifA, Fis Family; KEGG: mca:MCA0764 transcriptional regulator NifA; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase. (525 aa)    
Predicted Functional Partners:
Hhal_2126
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.822
Hhal_0278
Hypothetical protein; KEGG: dar:Daro_1395 nitrogen fixation protein NifW.
 
   
 0.759
Hhal_0280
PFAM: NifQ family protein; KEGG: dar:Daro_1448 NifQ.
 
   
 0.755
Hhal_0276
KEGG: dar:Daro_1418 hypothetical protein.
 
     0.721
Hhal_0277
NifZ family protein; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; NifZ family protein; KEGG: dar:Daro_1394 NifZ.
 
   
 0.689
Hhal_0281
TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM domain protein; KEGG: dar:Daro_1454 nitrogenase cofactor biosynthesis protein NifB.
 
   
 0.671
Hhal_2149
KEGG: mgm:Mmc1_1929 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
   
 
 0.601
Hhal_0366
KEGG: mgm:Mmc1_3409 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
   
 
 0.597
Hhal_0270
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: dar:Daro_1410 dinitrogenase iron-molybdenum cofactor biosynthesis.
 
   
 0.568
Hhal_0272
Mo-nitrogenase MoFe protein subunit NifK; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
 
   
 0.566
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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