STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0299KEGG: nwi:Nwi_2162 hypothetical protein. (253 aa)    
Predicted Functional Partners:
Hhal_0298
cyclic-AMP phosphodiesterase; PFAM: beta-lactamase domain protein; KEGG: mfa:Mfla_2128 beta-lactamase-like protein.
       0.631
Hhal_0300
Hypothetical protein.
       0.517
Hhal_0301
PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mgm:Mmc1_1857 metal dependent phosphohydrolase.
       0.433
Hhal_0302
Putative Chase2 sensor protein; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: hch:HCH_02328 adenylate cyclase, family 3.
       0.433
Hhal_0296
Hypothetical protein.
       0.432
Hhal_0297
PFAM: Lytic transglycosylase, catalytic; KEGG: pha:PSHAb0242 putative transglycosylase.
       0.432
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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