STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0304KEGG: hch:HCH_02326 hypothetical protein. (542 aa)    
Predicted Functional Partners:
Hhal_0303
PFAM: Tetratricopeptide TPR_4; KEGG: hch:HCH_02327 protein containing tetratricopeptide repeat.
 
     0.957
Hhal_0302
Putative Chase2 sensor protein; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: hch:HCH_02328 adenylate cyclase, family 3.
 
     0.922
Hhal_0301
PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mgm:Mmc1_1857 metal dependent phosphohydrolase.
 
     0.913
Hhal_1889
Putative adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: hch:HCH_02328 adenylate cyclase, family 3.
 
     0.828
Hhal_0298
cyclic-AMP phosphodiesterase; PFAM: beta-lactamase domain protein; KEGG: mfa:Mfla_2128 beta-lactamase-like protein.
 
     0.779
Hhal_0305
PFAM: 20S proteasome, A and B subunits; KEGG: mca:MCA2055 hypothetical protein.
       0.594
Hhal_2268
PFAM: heat shock protein DnaJ domain protein; KEGG: aeh:Mlg_2497 heat shock protein DnaJ domain protein.
  
     0.476
Hhal_0300
Hypothetical protein.
       0.455
Hhal_1381
PFAM: response regulator receiver; KEGG: pha:PSHAb0169 putative two domain protein: response regulator receiver domain protein.
  
     0.418
kdkA
Lipopolysaccharide kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
  
     0.408
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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