STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0318Hypothetical protein. (181 aa)    
Predicted Functional Partners:
Hhal_0319
Hypothetical protein.
  
  
 0.776
Hhal_0317
Hypothetical protein.
       0.773
Hhal_2375
TIGRFAM: general secretion pathway protein J; KEGG: aeh:Mlg_2388 general secretion pathway protein J.
  
 
 0.560
Hhal_2389
KEGG: aeh:Mlg_2386 general secretion pathway protein K.
  
 
 0.524
Hhal_1314
PFAM: beta-lactamase domain protein; KEGG: lmo:lmo0945 hypothetical protein.
   
  
 0.482
Hhal_0326
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06149 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
  
   0.481
Hhal_2020
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: aeh:Mlg_2079 type IV-A pilus assembly ATPase PilB.
  
   0.481
Hhal_2377
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
   0.481
Hhal_0325
PFAM: type II secretion system protein; KEGG: ilo:IL0371 type II secretory pathway.
  
    0.463
Hhal_2021
PFAM: type II secretion system protein; KEGG: ppu:PP_0633 type IV pili biogenesis protein PilC.
  
    0.463
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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