STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0331KEGG: pat:Patl_0168 MSHA biogenesis protein MshJ. (219 aa)    
Predicted Functional Partners:
Hhal_0329
TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; KEGG: pca:Pcar_0385 putative MSHA biogenesis protein MshL; Belongs to the bacterial secretin family.
 
  
 0.959
Hhal_0332
PFAM: Fimbrial assembly family protein; KEGG: pca:Pcar_0381 MshA biogenesis protein MshI-1.
 
     0.957
Hhal_0327
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_06150 FOG: TPR repeat.
 
     0.928
Hhal_0328
SMART: AAA ATPase; KEGG: hch:HCH_06152 type II secretory pathway, component ExeA (predicted ATPase).
 
    0.876
Hhal_2388
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.854
Hhal_0325
PFAM: type II secretion system protein; KEGG: ilo:IL0371 type II secretory pathway.
 
  
 0.835
Hhal_0326
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06149 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
  
 0.822
Hhal_0330
Hypothetical protein.
       0.773
Hhal_0324
KEGG: tth:TTC1836 hypothetical protein.
 
  
 0.669
Hhal_0609
Type IV pilus assembly PilZ; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein.
  
     0.638
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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