STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0332PFAM: Fimbrial assembly family protein; KEGG: pca:Pcar_0381 MshA biogenesis protein MshI-1. (553 aa)    
Predicted Functional Partners:
Hhal_0329
TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; KEGG: pca:Pcar_0385 putative MSHA biogenesis protein MshL; Belongs to the bacterial secretin family.
 
  
 0.961
Hhal_0331
KEGG: pat:Patl_0168 MSHA biogenesis protein MshJ.
 
     0.960
Hhal_0327
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_06150 FOG: TPR repeat.
 
     0.916
Hhal_0325
PFAM: type II secretion system protein; KEGG: ilo:IL0371 type II secretory pathway.
 
 
 
 0.859
Hhal_0326
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06149 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 
 0.842
Hhal_0328
SMART: AAA ATPase; KEGG: hch:HCH_06152 type II secretory pathway, component ExeA (predicted ATPase).
 
    0.804
Hhal_0330
Hypothetical protein.
       0.773
Hhal_2255
PFAM: type II and III secretion system protein; NolW domain protein; KEGG: aeh:Mlg_2759 type IV pilus secretin PilQ.
  
 
 0.734
Hhal_0324
KEGG: tth:TTC1836 hypothetical protein.
 
  
 0.698
Hhal_0321
Hypothetical protein; KEGG: cpf:CPF_2568 putative type IV pilin.
 
  
 0.619
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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